The Jury had chosen the winners of the JAX Innovation Award 2006 who received the awards during a ceremony at JAX on May 11, 2006.

The winners are:

• 1st Prize (10.000 Euro): Spring Framework
• 2nd Prize (5.000 Euro): E-Chalk
• 3rd Prize (2.000 Euro): Bioclipse
• 4th Prize (1.000 Euro). RAP
• 5th Prize (1.000 Euro): World of Java
• Audience Award (1.000 Euro): Bioclipse